WebKnossos - GT Segmentation Task Handling Current

1. Task Assignment

1. Check the task queue in WebKnossos for assigned tasks
2. Review task description and requirements before starting
3. Confirm you have access to all required datasets
4. Note any special instructions or priority flags

2. Task Execution

1. Open the task in WebKnossos with correct viewport settings
2. Follow the specific annotation protocol for the task type:
   • General annotation checklist: See GT Checklist (SOP-003)
   • Verification / review: See GT Verification (SOP-002)
3. Save periodically if your tool doesn't autosave — WebKnossos autosaves, so no action is needed there
4. Document any ambiguous cases or weirdness in the task notes — capture anything that looks off
5. If something recurs as a motif that could affect the protocol, ask the task giver how to handle it as soon as possible — getting ahead of it avoids having to go back and fix every instance across the volume

3. Quality Check

1. Complete the pre-submission checklist before marking task complete
2. Review all annotations for completeness
3. Verify naming conventions are followed
4. Check for any missed structures in assigned volume

4. Submission

1. Mark the task as "Complete" in WebKnossos
2. Ping the task giver on Slack with the result — e.g. "Finished Vol-4 cell seg, moving onto Vol-4 mito." Do this as each sub-task wraps up, not just at the very end.
3. In that same message, flag anything worth a second look — e.g. "Lots of blown membranes in Vol-4, just a heads up. I noted some specific seg IDs that might need a second pair of eyes."
4. Give the team lead a heads up if the task required significant deviations from protocol