Curated Links
A collection of example 3D Neuroglancer scenes shared by the team — things worth a look across our datasets (ZFish, Pinky 100, Minnie, and Fly). Grouped by dataset, each entry opens a self-contained view or a saved scene you can explore.
Compiled from Ryan's shared sheet. Many of these are older links that may need restoration before they load — if one is dead, use the Restore step below.
Link won't load? Older saved scenes (appspot / json_url / nglstate links) can go stale. Use the Restore button on an entry — it copies the link and opens the FlyWire Link Restorer, where you paste it in to revive the scene.
ZFish
-
Synapse detection
Pinky 100
-
Synapse detection
Minnie
-
Basket cells (1 of 3)
No EM, but shows the morphology of basket cells
-
Basket cells (2 of 3)
No EM, but shows the morphology of basket cells
-
Basket cells (3 of 3)
No EM, but shows the morphology of basket cells
Fly
-
All lobe meshes (from Philipp Schlegel, Cambridge)
Inline neuroglancer state (self-contained)
-
C2 cluster
-
Error/break: blown membrane merger
Failure-mode example
-
Error/break: multiple failure modes
Failure-mode example
-
Error/break: ER/PM pinch (mistaken for a break)
Failure-mode example
-
Synapses between cell trunks
Link pending in source sheet
link pending -
Synapse detection
Link pending in source sheet
link pending -
Dark cells with large vesicles
Inline neuroglancer state (self-contained)
-
Membrane broken by golgi apparatus?
Inline neuroglancer state (self-contained)
-
Parallel bundles
-
My LO meshes
Still looking for most up-to-date link with LOP layers as well
-
Will's meshes: optic lobe meshes
Inline neuroglancer state (self-contained)
-
Will's meshes: sample/test mesh of LO layer
Spelunker middleauth link